Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs144201442 chr7:105155352 C/A 5.12E-5 177 20.28 29.43 2.28 KM Plot
PCPG rs144219760 chr8:53842147 C/T 4.76E-5 174 24.85 27.82 20 KM Plot
PCPG rs144289287 chr16:89974729 CCCA/C 0.00018 173 25.87 20.28 36.37 KM Plot
PCPG rs144319444 chr7:158664298 GTCGCTGCTGGTGACAGGTTGATAGC/G 0 177 25.53 20.37 3.17 KM Plot
PCPG rs144353356 chr2:136544423 C/T 3.01E-5 175 25.67 24.98 9.72 KM Plot
PCPG rs144357263 chr13:114177451 CTT/C 4.67E-12 177 24.17 30.33 3.32 KM Plot
PCPG rs144487456 chr12:56677261 G/A 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs144509537 chr7:36175516 CG/C 0.000445 177 25.6 24.6 14.37 KM Plot
PCPG rs144512661 chr15:43036170 GTC/G 1.39E-6 177 25.7 24.53 26.73 KM Plot
PCPG rs144546764 chr7:105165828 G/GA 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs144649945 chr10:29851580 T/C 4.89E-11 177 25.6 17.77 10.3 KM Plot
PCPG rs144679328 chr12:12486084 A/G 2.1E-8 171 25.17 28.47 7.2 KM Plot
PCPG rs144732070 chr7:105155487 C/G 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs144766880 chr16:89906937 T/A 0.000182 173 25.87 23.37 36.37 KM Plot
PCPG rs144830742 chr10:131939022 AT/A 0 175 25.4 25.97 3.17 KM Plot